Solyc02g065730.2.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002159 (SeedPlants) Phylogenetic Tree(s): OG_06_0002159_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g065730.2.1
Cluster	HCCA: Cluster_162

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00217560	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00001p00270400	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00002p00262760	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AMTR_s00021p00254030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00047p00181740	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00047p00190220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT1G26310	AGL10, CAL1, CAL	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.06	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT3G04100	AGL57	AGAMOUS-like 57	0.03	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.08	Archaeplastida
AT3G66656	AGL91	AGAMOUS-like 91	0.02	Archaeplastida
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.03	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.03	Archaeplastida
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
GSVIVT01006592001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01010221001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01014093001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01015649001	No alias	No description available	0.03	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01027577001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.07	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_03807	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_05128	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_15398	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_28337	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.03	Archaeplastida
Gb_41550	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os01g66290.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g01355.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os02g36924.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os03g03100.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os05g11414.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os06g06750.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
LOC_Os06g11330.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g23950.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os07g01820.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os08g41950.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os09g32948.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_10256834g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_10332736g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_126898g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_138440g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_15122g0010	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_16120g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_18048g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_254338g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_32676g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_35712g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_51624g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_5917g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_63212g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.03	Archaeplastida
MA_69370g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_758606g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.03	Archaeplastida
MA_8748850g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_9382435g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c12_22890V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.02	Archaeplastida
Pp3c17_13070V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.02	Archaeplastida
Pp3c3_31770V3.1	No alias	AGAMOUS-like 104	0.03	Archaeplastida
Pp3c4_3820V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Smo5960	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Solyc01g093960.3.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.06	Archaeplastida
Solyc02g089200.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc03g114830.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc04g076280.4.1	No alias	MADS-box protein SVP OS=Arabidopsis thaliana...	0.04	Archaeplastida
Solyc08g080100.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc11g005120.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e003670_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e005705_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e006950_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e012024_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e012026_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e015447_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e018811_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e023236_P005	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e027031_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e027034_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	83	169

External Links

No external refs found!

Solyc02g065730.2.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation