1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g067630.3.1

Solyc02g067630.3.1


Description : Polygalacturonase OS=Prunus persica (sp|p48979|pglr_prupe : 483.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 243.4)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0001044 (LandPlants) Phylogenetic Tree(s): OG_05_0001044_tree ,
OG_06_0000479 (SeedPlants) Phylogenetic Tree(s): OG_06_0000479_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g067630.3.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00198650 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00019p00031370 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00066p00135670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00085p00112760 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.04 Archaeplastida
AT1G02460 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
AT1G05650 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G65570 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G80170 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT4G01890 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
GSVIVT01004007001 No alias Polygalacturonase OS=Prunus persica 0.05 Archaeplastida
GSVIVT01013800001 No alias Cell wall.pectin.modification and... 0.05 Archaeplastida
GSVIVT01017302001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01028132001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01038243001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.05 Archaeplastida
Gb_12018 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
Gb_33196 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os01g19170.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
LOC_Os03g11760.1 No alias Polygalacturonase OS=Actinidia deliciosa... 0.05 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.07 Archaeplastida
LOC_Os05g46510.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os05g46520.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g50260.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os11g14410.1 No alias Polygalacturonase OS=Prunus persica... 0.05 Archaeplastida
MA_10862g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.04 Archaeplastida
MA_63122g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
MA_754919g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.04 Archaeplastida
MA_9231294g0010 No alias No annotation 0.04 Archaeplastida
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Smo111266 No alias Polygalacturonase OS=Chamaecyparis obtusa 0.03 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.04 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc04g025440.3.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.05 Archaeplastida
Solyc07g015870.4.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc10g080210.2.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
Solyc12g009420.3.1 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc12g019130.3.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
Solyc12g019220.1.1 No alias Polygalacturonase OS=Prunus persica... 0.07 Archaeplastida
Zm00001e011814_P002 No alias Polygalacturonase OS=Actinidia deliciosa... 0.05 Archaeplastida
Zm00001e019002_P001 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
Zm00001e026160_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e026240_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e027720_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e036989_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 50 376
No external refs found!