Description : polygalacturonase (QRT3)

Gene families : OG0003590 (Archaeplastida) Phylogenetic Tree(s): OG0003590_tree ,
OG_05_0002501 (LandPlants) Phylogenetic Tree(s): OG_05_0002501_tree ,
OG_06_0001950 (SeedPlants) Phylogenetic Tree(s): OG_06_0001950_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Solyc02g068400.3.1
Cluster HCCA: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00255270 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00102p00131940 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.03 Archaeplastida
AT4G20050 QRT3 Pectin lyase-like superfamily protein 0.16 Archaeplastida
GSVIVT01012139001 No alias Cell wall.pectin.modification and... 0.15 Archaeplastida
LOC_Os04g52320.1 No alias polygalacturonase (QRT3) 0.05 Archaeplastida
MA_10425986g0010 No alias polygalacturonase (QRT3) 0.03 Archaeplastida
MA_8818361g0010 No alias polygalacturonase (QRT3) 0.02 Archaeplastida
MA_917578g0010 No alias polygalacturonase (QRT3) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006020 inositol metabolic process IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0019310 inositol catabolic process IEP Neighborhood
BP GO:0044275 cellular carbohydrate catabolic process IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
MF GO:0050113 inositol oxygenase activity IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR024535 Pectate_lyase_SF_prot 79 299
No external refs found!