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  5. Solyc02g069260.3.1

Solyc02g069260.3.1


Description : siRNA-binding factor (AGO2) of non-canonical RdDM pathway


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0002747 (LandPlants) Phylogenetic Tree(s): OG_05_0002747_tree ,
OG_06_0002302 (SeedPlants) Phylogenetic Tree(s): OG_06_0002302_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g069260.3.1
Cluster HCCA: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
AMTR_s00008p00203230 evm_27.TU.AmTr_v1... Protein argonaute 16 OS=Oryza sativa subsp. japonica 0.01 Archaeplastida
Cre02.g141050 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica 0.01 Archaeplastida
LOC_Os02g45070.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida
MA_10427005g0010 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 Archaeplastida
MA_246308g0010 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
MA_594g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Solyc03g098280.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e011855_P002 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Zm00001e025496_P001 No alias siRNA-integrating factor (AGO) 0.02 Archaeplastida
Zm00001e036986_P001 No alias Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR003100 PAZ_dom 417 539
IPR003165 Piwi 711 1001
IPR014811 ArgoL1 362 409
IPR032472 ArgoL2 558 602
IPR032474 Argonaute_N 215 352
No external refs found!