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  5. Solyc02g069510.1.1

Solyc02g069510.1.1


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana (sp|q9fgh2|lsh5_arath : 225.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g069510.1.1
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AT2G42610 LSH10 Protein of unknown function (DUF640) 0.02 Archaeplastida
AT3G04510 LSH2 Protein of unknown function (DUF640) 0.03 Archaeplastida
AT3G23290 LSH4 No description available 0.02 Archaeplastida
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.02 Archaeplastida
LOC_Os02g07030.1 No alias Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os07g04670.1 No alias Protein G1 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_12926g0010 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
Solyc10g008000.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.01 Archaeplastida
Zm00001e004570_P001 No alias Protein G1-like4 OS=Oryza sativa subsp. indica... 0.01 Archaeplastida
Zm00001e012687_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.01 Archaeplastida
Zm00001e016177_P002 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.07 Archaeplastida
Zm00001e019403_P001 No alias Protein G1-like7 OS=Oryza sativa subsp. indica... 0.01 Archaeplastida
Zm00001e023639_P001 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.06 Archaeplastida
Zm00001e027222_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.02 Archaeplastida
Zm00001e028824_P001 No alias Protein G1-like8 OS=Oryza sativa subsp. indica... 0.05 Archaeplastida
Zm00001e032784_P001 No alias Protein G1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e037775_P001 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 31 151
No external refs found!