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  5. Solyc02g070390.3.1

Solyc02g070390.3.1


Description : PAP5/TAC12 cofactor of plastid-encoded RNA polymerase. transcriptional coactivator (HEMERA)


Gene families : OG0007706 (Archaeplastida) Phylogenetic Tree(s): OG0007706_tree ,
OG_05_0007174 (LandPlants) Phylogenetic Tree(s): OG_05_0007174_tree ,
OG_06_0007904 (SeedPlants) Phylogenetic Tree(s): OG_06_0007904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g070390.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT2G34640 PTAC12, HMR plastid transcriptionally active 12 0.15 Archaeplastida
GSVIVT01021555001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 Archaeplastida
Gb_08037 No alias PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.04 Archaeplastida
LOC_Os01g56350.3 No alias PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.12 Archaeplastida
MA_8815984g0010 No alias PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.02 Archaeplastida
Mp1g24680.1 No alias PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.08 Archaeplastida
Pp3c10_12300V3.1 No alias plastid transcriptionally active 12 0.02 Archaeplastida
Pp3c3_26950V3.1 No alias plastid transcriptionally active 12 0.02 Archaeplastida
Zm00001e019697_P001 No alias PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!