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  5. AMTR_s00022p00233860

AMTR_s00022p00233860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.320

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL31 component


Gene families : OG0002465 (Archaeplastida) Phylogenetic Tree(s): OG0002465_tree ,
OG_05_0002610 (LandPlants) Phylogenetic Tree(s): OG_05_0002610_tree ,
OG_06_0002770 (SeedPlants) Phylogenetic Tree(s): OG_06_0002770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00233860
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT2G19740 No alias Ribosomal protein L31e family protein 0.05 Archaeplastida
AT4G26230 No alias Ribosomal protein L31e family protein 0.05 Archaeplastida
AT5G56710 No alias Ribosomal protein L31e family protein 0.1 Archaeplastida
Cpa|evm.model.tig00020703.20 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.29 Archaeplastida
Cre12.g489153 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.26 Archaeplastida
GSVIVT01015251001 No alias 60S ribosomal protein L31 OS=Nicotiana glutinosa 0.21 Archaeplastida
GSVIVT01032061001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Gb_05851 No alias component RPL31 of LSU proteome component 0.13 Archaeplastida
Gb_24728 No alias component RPL31 of LSU proteome component 0.1 Archaeplastida
LOC_Os02g48660.1 No alias component RPL31 of LSU proteome component 0.14 Archaeplastida
LOC_Os06g21480.1 No alias component RPL31 of LSU proteome component 0.03 Archaeplastida
MA_14317g0010 No alias component RPL31 of LSU proteome component 0.1 Archaeplastida
MA_8286g0010 No alias component RPL31 of LSU proteome component 0.02 Archaeplastida
Mp7g18320.1 No alias component RPL31 of LSU proteome component 0.36 Archaeplastida
Pp3c10_8090V3.1 No alias Ribosomal protein L31e family protein 0.17 Archaeplastida
Pp3c14_7550V3.1 No alias Ribosomal protein L31e family protein 0.23 Archaeplastida
Pp3c1_34390V3.1 No alias Ribosomal protein L31e family protein 0.17 Archaeplastida
Pp3c25_8980V3.1 No alias Ribosomal protein L31e family protein 0.13 Archaeplastida
Pp3c2_16490V3.1 No alias Ribosomal protein L31e family protein 0.24 Archaeplastida
Smo268515 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Solyc05g008010.3.1 No alias component RPL31 of LSU proteome component 0.16 Archaeplastida
Solyc12g008720.2.1 No alias component RPL31 of LSU proteome component 0.21 Archaeplastida
Zm00001e003520_P001 No alias component RPL31 of LSU proteome component 0.11 Archaeplastida
Zm00001e015659_P001 No alias component RPL31 of LSU proteome component 0.02 Archaeplastida
Zm00001e023413_P001 No alias component RPL31 of LSU proteome component 0.2 Archaeplastida
Zm00001e036927_P001 No alias component RPL31 of LSU proteome component 0.17 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000054 Ribosomal_L31e 10 93
No external refs found!