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  5. Solyc02g072010.3.1

Solyc02g072010.3.1


Description : Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana (sp|o49399|pp321_arath : 261.0)


Gene families : OG0006821 (Archaeplastida) Phylogenetic Tree(s): OG0006821_tree ,
OG_05_0008064 (LandPlants) Phylogenetic Tree(s): OG_05_0008064_tree ,
OG_06_0003928 (SeedPlants) Phylogenetic Tree(s): OG_06_0003928_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g072010.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
AMTR_s00003p00144440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31920... 0.06 Archaeplastida
AMTR_s00010p00121230 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.03 Archaeplastida
AMTR_s00010p00246040 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00016p00241430 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00016p00242080 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.04 Archaeplastida
AMTR_s00019p00093260 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g22410,... 0.06 Archaeplastida
AMTR_s00029p00051450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56550... 0.04 Archaeplastida
AMTR_s00029p00110030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
AMTR_s00032p00145740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g15510,... 0.13 Archaeplastida
AMTR_s00049p00220350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g02980,... 0.04 Archaeplastida
AMTR_s00059p00175950 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.06 Archaeplastida
AMTR_s00092p00099090 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
AMTR_s01859p00006880 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 242 264
IPR002885 Pentatricopeptide_repeat 150 173
IPR002885 Pentatricopeptide_repeat 181 209
IPR002885 Pentatricopeptide_repeat 212 240
No external refs found!