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  5. AMTR_s00022p00239970

AMTR_s00022p00239970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.339

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13 component


Gene families : OG0002427 (Archaeplastida) Phylogenetic Tree(s): OG0002427_tree ,
OG_05_0002444 (LandPlants) Phylogenetic Tree(s): OG_05_0002444_tree ,
OG_06_0003447 (SeedPlants) Phylogenetic Tree(s): OG_06_0003447_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00239970
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT3G49010 BBC1, RSU2, ATBBC1 breast basic conserved 1 0.28 Archaeplastida
AT5G23900 No alias Ribosomal protein L13e family protein 0.14 Archaeplastida
Cpa|evm.model.tig00020629.36 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Cre14.g630100 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
GSVIVT01027212001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
GSVIVT01030767001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
LOC_Os03g37970.1 No alias component RPL13 of LSU proteome component 0.04 Archaeplastida
LOC_Os06g02510.2 No alias component RPL13 of LSU proteome component 0.2 Archaeplastida
MA_103031g0010 No alias no hits & (original description: none) 0.2 Archaeplastida
MA_10430790g0030 No alias component RPL13 of LSU proteome component 0.02 Archaeplastida
Mp1g04920.1 No alias component RPL13 of LSU proteome component 0.28 Archaeplastida
Mp2g19790.1 No alias component RPL13 of LSU proteome component 0.27 Archaeplastida
Pp3c10_7370V3.1 No alias breast basic conserved 1 0.15 Archaeplastida
Pp3c13_15900V3.1 No alias breast basic conserved 1 0.17 Archaeplastida
Pp3c1_26280V3.1 No alias breast basic conserved 1 0.18 Archaeplastida
Pp3c3_21130V3.1 No alias breast basic conserved 1 0.06 Archaeplastida
Smo165483 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Smo266648 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Solyc08g075700.3.1 No alias component RPL13 of LSU proteome component 0.22 Archaeplastida
Solyc12g096150.2.1 No alias component RPL13 of LSU proteome component 0.17 Archaeplastida
Zm00001e018804_P001 No alias component RPL13 of LSU proteome component 0.22 Archaeplastida
Zm00001e028430_P003 No alias component RPL13 of LSU proteome component 0.16 Archaeplastida
Zm00001e031172_P001 No alias component RPL13 of LSU proteome component 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 7 183
No external refs found!