Solyc02g077290.2.1


Description : ligand-gated cation channel (GLR)


Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0016587 (LandPlants) Phylogenetic Tree(s): OG_05_0016587_tree ,
OG_06_0016199 (SeedPlants) Phylogenetic Tree(s): OG_06_0016199_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g077290.2.1
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00140120 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00019p00178550 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00019p00179820 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.05 Archaeplastida
AMTR_s00019p00180640 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.05 Archaeplastida
AMTR_s00019p00180760 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00019p00181760 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00019p00181830 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00019p00182190 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00184790 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00021p00172130 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.06 Archaeplastida
AMTR_s00021p00176450 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AT2G24710 GLR2.3, ATGLR2.3 glutamate receptor 2.3 0.02 Archaeplastida
AT2G24720 GLR2.2, ATGLR2.2 glutamate receptor 2.2 0.04 Archaeplastida
AT2G29100 ATGLR2.9, GLR2.9 glutamate receptor 2.9 0.05 Archaeplastida
AT2G29110 GLR2.8, ATGLR2.8 glutamate receptor 2.8 0.07 Archaeplastida
AT2G29120 GLR2.7, ATGLR2.7 glutamate receptor 2.7 0.05 Archaeplastida
AT3G04110 ATGLR1.1, GLR1.1, GLR1 glutamate receptor 1.1 0.04 Archaeplastida
AT3G07520 GLR1.4, ATGLR1.4 glutamate receptor 1.4 0.03 Archaeplastida
AT5G11180 ATGLR2.6, GLR2.6 glutamate receptor 2.6 0.03 Archaeplastida
AT5G11210 GLR2.5, ATGLR2.5 glutamate receptor 2.5 0.05 Archaeplastida
AT5G48400 ATGLR1.2, GLR1.2 Glutamate receptor family protein 0.05 Archaeplastida
AT5G48410 ATGLR1.3, GLR1.3 glutamate receptor 1.3 0.06 Archaeplastida
GSVIVT01014244001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
GSVIVT01021155001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01033129001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01033150001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
Gb_09070 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
Gb_16129 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Gb_20613 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
Gb_28362 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
Gb_39752 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
LOC_Os02g54640.1 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
LOC_Os06g08930.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
LOC_Os06g09090.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
LOC_Os09g26144.1 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
MA_10226232g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_10426811g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10429132g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_212254g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_32301g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_339780g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_391859g0010 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
MA_43501g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_6222576g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_7872524g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_9039812g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_958834g0010 No alias ligand-gated cation channel (GLR) 0.08 Archaeplastida
MA_9896648g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g063190.3.1 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
Solyc06g063210.3.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Solyc07g052400.3.1 No alias ligand-gated cation channel (GLR) 0.08 Archaeplastida
Zm00001e009847_P001 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
Zm00001e023728_P001 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015693 magnesium ion transport IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001638 Solute-binding_3/MltF_N 469 783
IPR001320 Iontro_rcpt 784 814
IPR001828 ANF_lig-bd_rcpt 43 385
No external refs found!