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  5. Solyc02g078610.4.1

Solyc02g078610.4.1


Description : component SF3B2 of splicing factor 3B complex


Gene families : OG0003666 (Archaeplastida) Phylogenetic Tree(s): OG0003666_tree ,
OG_05_0003648 (LandPlants) Phylogenetic Tree(s): OG_05_0003648_tree ,
OG_06_0005895 (SeedPlants) Phylogenetic Tree(s): OG_06_0005895_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g078610.4.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT4G21660 No alias proline-rich spliceosome-associated (PSP) family protein 0.04 Archaeplastida
Cpa|evm.model.tig00000829.24 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre12.g514450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01002655001 No alias No description available 0.04 Archaeplastida
LOC_Os02g58090.1 No alias component SF3B2 of splicing factor 3B complex 0.03 Archaeplastida
MA_258650g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp7g16820.1 No alias component SF3B2 of splicing factor 3B complex 0.02 Archaeplastida
Pp3c17_13490V3.1 No alias proline-rich spliceosome-associated (PSP) family protein 0.02 Archaeplastida
Smo232603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Zm00001e013359_P002 No alias component SF3B2 of splicing factor 3B complex 0.1 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 314 359
IPR007180 DUF382 180 305
No external refs found!