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  5. Solyc02g079810.3.1

Solyc02g079810.3.1


Description : transcription factor (bHLH)


Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0000297 (LandPlants) Phylogenetic Tree(s): OG_05_0000297_tree ,
OG_06_0013959 (SeedPlants) Phylogenetic Tree(s): OG_06_0013959_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g079810.3.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00170610 evm_27.TU.AmTr_v1... External stimuli response.temperature.ICE-CBF cold... 0.02 Archaeplastida
AMTR_s00019p00254380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
AT2G16910 AMS basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 Archaeplastida
AT3G26744 ATICE1, ICE1, SCRM basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT4G21330 DYT1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.07 Archaeplastida
AT5G65640 bHLH093 beta HLH protein 93 0.03 Archaeplastida
GSVIVT01004405001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 Archaeplastida
GSVIVT01009234001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.01 Archaeplastida
GSVIVT01013720001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 Archaeplastida
GSVIVT01013744001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.11 Archaeplastida
GSVIVT01013745001 No alias Transcription factor bHLH90 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01024008001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.08 Archaeplastida
Gb_15579 No alias transcription factor (bHLH) 0.03 Archaeplastida
Gb_26391 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os02g02820.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
LOC_Os10g39750.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os11g32100.1 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 Archaeplastida
MA_10435231g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 Archaeplastida
MA_20585g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.01 Archaeplastida
MA_439607g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_63506g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.02 Archaeplastida
MA_8625975g0010 No alias Transcription factor SCREAM2 OS=Arabidopsis thaliana... 0.01 Archaeplastida
MA_89559g0020 No alias Transcription factor ABORTED MICROSPORES OS=Arabidopsis... 0.02 Archaeplastida
Mp4g04920.1 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.02 Archaeplastida
Mp5g03020.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c1_20960V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Pp3c2_16410V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c8_18070V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Smo431375 No alias No description available 0.03 Archaeplastida
Solyc06g051550.4.1 No alias transcription factor (bHLH). iron uptake transcription factor FIT 0.04 Archaeplastida
Zm00001e010525_P001 No alias transcription factor (bHLH) 0.07 Archaeplastida
Zm00001e021526_P001 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 Archaeplastida
Zm00001e025243_P003 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0051321 meiotic cell cycle IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 38 85
No external refs found!