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  5. Solyc02g080840.1.1

Solyc02g080840.1.1


Description : Probable F-box protein At4g22030 OS=Arabidopsis thaliana (sp|o65451|fb333_arath : 319.0)


Gene families : OG0001122 (Archaeplastida) Phylogenetic Tree(s): OG0001122_tree ,
OG_05_0000683 (LandPlants) Phylogenetic Tree(s): OG_05_0000683_tree ,
OG_06_0000651 (SeedPlants) Phylogenetic Tree(s): OG_06_0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g080840.1.1
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00037390 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00044p00128270 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00044p00128640 evm_27.TU.AmTr_v1... Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.07 Archaeplastida
AT4G04480 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.03 Archaeplastida
AT4G22030 No alias F-box family protein with a domain of unknown function (DUF295) 0.06 Archaeplastida
GSVIVT01012691001 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.07 Archaeplastida
Gb_15744 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_15745 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_15746 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g13190.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g13260.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os12g01970.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc02g080850.1.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006528 asparagine metabolic process IEP Neighborhood
BP GO:0006529 asparagine biosynthetic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR027949 Chloroplast_duf 81 395
No external refs found!