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  4. Sequence
  5. Solyc02g080910.4.1

Solyc02g080910.4.1


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0026961 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0085492 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g080910.4.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.05 Archaeplastida
AT4G22090 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT5G04310 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G55720 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01007582001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.07 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Gb_02248 No alias pectate lyase 0.02 Archaeplastida
Gb_19802 No alias pectate lyase 0.03 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.04 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10320110g0010 No alias Pectate lyase 1 OS=Chamaecyparis obtusa... 0.03 Archaeplastida
MA_10332686g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10353668g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.04 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.04 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.03 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.02 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.04 Archaeplastida
MA_476625g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.03 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.03 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_10470V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c21_16990V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3s38_30V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Solyc03g111690.4.1 No alias pectate lyase 0.06 Archaeplastida
Solyc05g014000.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.02 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
MF GO:0016151 nickel cation binding IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 119 304
IPR002022 Pec_lyase 493 676
No external refs found!