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  5. Solyc02g081210.3.1

Solyc02g081210.3.1


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0010776 (SeedPlants) Phylogenetic Tree(s): OG_06_0010776_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g081210.3.1
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00115760 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.08 Archaeplastida
AMTR_s00044p00061510 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AT2G37640 ATEXPA3, EXP3,... Barwin-like endoglucanases superfamily protein 0.01 Archaeplastida
AT4G01630 ATHEXP ALPHA... expansin A17 0.01 Archaeplastida
AT5G39270 EXPA22, ATEXP22,... expansin A22 0.03 Archaeplastida
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.01 Archaeplastida
GSVIVT01008762001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.01 Archaeplastida
GSVIVT01035233001 No alias Expansin-A13 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_01048 No alias alpha-class expansin 0.03 Archaeplastida
Gb_01958 No alias alpha-class expansin 0.04 Archaeplastida
Gb_20678 No alias alpha-class expansin 0.03 Archaeplastida
Gb_28036 No alias Expansin-A29 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os06g41700.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os08g44790.1 No alias alpha-class expansin 0.01 Archaeplastida
MA_3618g0010 No alias Expansin-A15 OS=Arabidopsis thaliana... 0.01 Archaeplastida
MA_4979g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_915221g0010 No alias alpha-class expansin 0.01 Archaeplastida
Pp3c13_8440V3.1 No alias expansin A9 0.04 Archaeplastida
Smo95369 No alias Expansin-A10 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc02g088100.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e003887_P001 No alias alpha-class expansin 0.01 Archaeplastida
Zm00001e003888_P001 No alias alpha-class expansin 0.01 Archaeplastida
Zm00001e003889_P001 No alias alpha-class expansin 0.01 Archaeplastida
Zm00001e010388_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e041376_P001 No alias alpha-class expansin 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 75 160
IPR007117 Expansin_CBD 171 248
No external refs found!