Solyc02g081250.3.1


Description : Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana (sp|q9m9x9|ppr18_arath : 1150.0)


Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0010501 (LandPlants) Phylogenetic Tree(s): OG_05_0010501_tree ,
OG_06_0085499 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g081250.3.1
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
Gb_22212 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
LOC_Os05g46740.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
MA_136157g0010 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 479 527
IPR000408 Reg_chr_condens 583 631
IPR000408 Reg_chr_condens 309 357
IPR000408 Reg_chr_condens 415 464
IPR002885 Pentatricopeptide_repeat 1728 1757
IPR002885 Pentatricopeptide_repeat 1900 1933
IPR002885 Pentatricopeptide_repeat 1977 2001
IPR002885 Pentatricopeptide_repeat 1329 1357
IPR002885 Pentatricopeptide_repeat 2013 2041
IPR002885 Pentatricopeptide_repeat 1296 1322
IPR002885 Pentatricopeptide_repeat 1548 1571
IPR000306 Znf_FYVE 640 701
IPR013591 Brevis_radix_dom 1007 1061
IPR002885 Pentatricopeptide_repeat 1764 1812
IPR002885 Pentatricopeptide_repeat 1581 1622
IPR002885 Pentatricopeptide_repeat 1465 1510
IPR002885 Pentatricopeptide_repeat 1643 1692
IPR002885 Pentatricopeptide_repeat 1834 1882
IPR002885 Pentatricopeptide_repeat 1392 1439
IPR027988 BRX_N 886 910
No external refs found!