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  5. Solyc02g081860.3.1

Solyc02g081860.3.1


Description : Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana (sp|o49436|pp327_arath : 847.0)


Gene families : OG0012190 (Archaeplastida) Phylogenetic Tree(s): OG0012190_tree ,
OG_05_0012125 (LandPlants) Phylogenetic Tree(s): OG_05_0012125_tree ,
OG_06_0010182 (SeedPlants) Phylogenetic Tree(s): OG_06_0010182_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g081860.3.1
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g30420.1 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.02 Archaeplastida
Zm00001e006401_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 422 451
IPR002885 Pentatricopeptide_repeat 386 415
IPR002885 Pentatricopeptide_repeat 179 201
IPR002885 Pentatricopeptide_repeat 453 502
IPR002885 Pentatricopeptide_repeat 243 292
IPR002885 Pentatricopeptide_repeat 316 361
IPR002885 Pentatricopeptide_repeat 524 572
IPR002885 Pentatricopeptide_repeat 595 642
No external refs found!