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  5. Solyc02g082700.3.1

Solyc02g082700.3.1


Description : HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 82.0)


Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0002258 (SeedPlants) Phylogenetic Tree(s): OG_06_0002258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g082700.3.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT1G20693 NFD2, HMG BETA... high mobility group B2 0.03 Archaeplastida
AT2G17560 NFD4, HMGB4, NFD04 high mobility group B4 0.05 Archaeplastida
Cpa|evm.model.tig00000663.58 No alias No description available 0.02 Archaeplastida
Cpa|evm.model.tig00001339.6 No alias No description available 0.02 Archaeplastida
GSVIVT01021424001 No alias High mobility group B protein 14 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01026642001 No alias HMG1/2-like protein OS=Glycine max 0.08 Archaeplastida
Gb_32435 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_39428 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 120.0) 0.02 Archaeplastida
LOC_Os08g01100.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os09g37910.1 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) 0.07 Archaeplastida
MA_72555g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp8g07450.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c17_7580V3.1 No alias high mobility group B3 0.02 Archaeplastida
Solyc04g008820.3.1 No alias High mobility group B protein 7 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 36 105
No external refs found!