Solyc02g083350.4.1

Description : DNA-directed RNA polymerase II subunit 1 OS=Arabidopsis thaliana (sp|p18616|nrpb1_arath : 395.0)

Gene families : OG0017749 (Archaeplastida) Phylogenetic Tree(s): OG0017749_tree ,
OG_05_0017561 (LandPlants) Phylogenetic Tree(s): OG_05_0017561_tree ,
OG_06_0017056 (SeedPlants) Phylogenetic Tree(s): OG_06_0017056_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g083350.4.1
Cluster	HCCA: Cluster_131

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005669	transcription factor TFIID complex	IEP	Neighborhood
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000684	RNA_pol_II_repeat_euk	249	262
IPR000684	RNA_pol_II_repeat_euk	221	234
IPR000684	RNA_pol_II_repeat_euk	228	241
IPR000684	RNA_pol_II_repeat_euk	319	332
IPR000684	RNA_pol_II_repeat_euk	298	311
IPR000684	RNA_pol_II_repeat_euk	284	297
IPR000684	RNA_pol_II_repeat_euk	242	255
IPR000684	RNA_pol_II_repeat_euk	305	318
IPR000684	RNA_pol_II_repeat_euk	235	248
IPR000684	RNA_pol_II_repeat_euk	389	402
IPR000684	RNA_pol_II_repeat_euk	333	346
IPR000684	RNA_pol_II_repeat_euk	256	269
IPR000684	RNA_pol_II_repeat_euk	449	462
IPR000684	RNA_pol_II_repeat_euk	263	276
IPR000684	RNA_pol_II_repeat_euk	270	283
IPR000684	RNA_pol_II_repeat_euk	354	367
IPR000684	RNA_pol_II_repeat_euk	375	388
IPR000684	RNA_pol_II_repeat_euk	326	339
IPR000684	RNA_pol_II_repeat_euk	368	381
IPR000684	RNA_pol_II_repeat_euk	361	374
IPR000684	RNA_pol_II_repeat_euk	347	360
IPR000684	RNA_pol_II_repeat_euk	277	290
IPR000684	RNA_pol_II_repeat_euk	396	409
IPR000684	RNA_pol_II_repeat_euk	340	353
IPR000684	RNA_pol_II_repeat_euk	382	395
IPR000684	RNA_pol_II_repeat_euk	213	227
IPR000684	RNA_pol_II_repeat_euk	422	433
IPR000684	RNA_pol_II_repeat_euk	312	325
IPR000684	RNA_pol_II_repeat_euk	291	304
IPR007081	RNA_pol_Rpb1_5	2	91

External Links

No external refs found!

Solyc02g083350.4.1

Expression Profile

Co-expression Networks

Functional Annotation