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Description : Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana (sp|q9ffg8|pp417_arath : 762.0)
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc02g084830.4.1 | |
| Cluster | HCCA: Cluster_60 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00006p00257350 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
| AMTR_s00014p00090010 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida | |
| AMTR_s00022p00232590 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| AMTR_s00061p00035580 | No alias | Pentatricopeptide repeat-containing protein At5g44230... | 0.04 | Archaeplastida | |
| AT5G47460 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
| GSVIVT01016833001 | No alias | No description available | 0.05 | Archaeplastida | |
| LOC_Os01g19380.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
| LOC_Os01g27650.1 | No alias | Pentatricopeptide repeat-containing protein At2g33680... | 0.03 | Archaeplastida | |
| LOC_Os01g68490.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Archaeplastida | |
| LOC_Os05g49740.1 | No alias | Pentatricopeptide repeat-containing protein At5g39680... | 0.03 | Archaeplastida | |
| LOC_Os07g39910.1 | No alias | Pentatricopeptide repeat-containing protein At1g25360... | 0.06 | Archaeplastida | |
| LOC_Os08g33700.1 | No alias | Pentatricopeptide repeat-containing protein At3g47530... | 0.03 | Archaeplastida | |
| LOC_Os11g01836.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| LOC_Os12g15460.1 | No alias | Pentatricopeptide repeat-containing protein At1g18485... | 0.04 | Archaeplastida | |
| MA_139163g0010 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
| MA_285386g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.07 | Archaeplastida | |
| Pp3c14_16110V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
| Pp3c16_5160V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
| Pp3c27_5540V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
| Pp3c2_12230V3.1 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
| Smo131170 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
| Solyc03g116840.3.1 | No alias | RNA editing factor (OTP81) | 0.04 | Archaeplastida | |
| Zm00001e019452_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Zm00001e039305_P001 | No alias | RNA editing factor (MEF13) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Neighborhood |
| MF | GO:0004650 | polygalacturonase activity | IEP | Neighborhood |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0016407 | acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0016410 | N-acyltransferase activity | IEP | Neighborhood |
| MF | GO:0051287 | NAD binding | IEP | Neighborhood |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Neighborhood |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 484 | 608 |
| IPR002885 | Pentatricopeptide_repeat | 108 | 151 |
| IPR002885 | Pentatricopeptide_repeat | 238 | 286 |
| IPR002885 | Pentatricopeptide_repeat | 341 | 388 |
| IPR002885 | Pentatricopeptide_repeat | 417 | 441 |
| IPR002885 | Pentatricopeptide_repeat | 210 | 236 |
| IPR002885 | Pentatricopeptide_repeat | 180 | 208 |
| No external refs found! |