1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g085090.1.1

Solyc02g085090.1.1


Description : SYP1-group Qa-type SNARE component


Gene families : OG0000372 (Archaeplastida) Phylogenetic Tree(s): OG0000372_tree ,
OG_05_0014004 (LandPlants) Phylogenetic Tree(s): OG_05_0014004_tree ,
OG_06_0015178 (SeedPlants) Phylogenetic Tree(s): OG_06_0015178_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g085090.1.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00235020 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
AMTR_s00045p00039700 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.04 Archaeplastida
AMTR_s00049p00050990 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
AMTR_s00103p00119740 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.04 Archaeplastida
GSVIVT01023788001 No alias Syntaxin-112 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01035559001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
Smo130326 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0005985 sucrose metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 241 291
IPR006011 Syntaxin_N 42 240
No external refs found!