1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g085570.4.1

Solyc02g085570.4.1


Description : large subunit of U2AF pre-RNA splicing auxiliary factor complex


Gene families : OG0000654 (Archaeplastida) Phylogenetic Tree(s): OG0000654_tree ,
OG_05_0001447 (LandPlants) Phylogenetic Tree(s): OG_05_0001447_tree ,
OG_06_0002423 (SeedPlants) Phylogenetic Tree(s): OG_06_0002423_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g085570.4.1
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AT1G60900 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.06 Archaeplastida
Cpa|evm.model.tig00021464.4 No alias No description available 0.01 Archaeplastida
Cre02.g093975 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre07.g352650 No alias No description available 0.02 Archaeplastida
Cre09.g391949 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01018993001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01027871001 No alias Splicing factor U2af large subunit A OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_32245 No alias Splicing factor U2af large subunit A OS=Triticum... 0.03 Archaeplastida
LOC_Os03g04520.2 No alias Splicing factor U2af large subunit B OS=Nicotiana... 0.03 Archaeplastida
LOC_Os11g45590.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
MA_10429502g0010 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
Mp6g18430.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 Archaeplastida
Mp6g18910.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
Pp3c10_9710V3.1 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.03 Archaeplastida
Pp3c14_9430V3.1 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.04 Archaeplastida
Smo160385 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Zm00001e021000_P006 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Zm00001e021119_P005 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 Archaeplastida
Zm00001e038951_P001 No alias Splicing factor U2af large subunit A OS=Nicotiana... 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 346 415
No external refs found!