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  5. Solyc02g086570.3.1

Solyc02g086570.3.1


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 412.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0014073 (LandPlants) Phylogenetic Tree(s): OG_05_0014073_tree ,
OG_06_0013025 (SeedPlants) Phylogenetic Tree(s): OG_06_0013025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g086570.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00173p00057570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
Smo92610 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
CC GO:0009539 photosystem II reaction center IEP Neighborhood
BP GO:0010109 regulation of photosynthesis IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
BP GO:0042548 regulation of photosynthesis, light reaction IEP Neighborhood
BP GO:0042549 photosystem II stabilization IEP Neighborhood
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 410 458
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 147 193
IPR002885 Pentatricopeptide_repeat 486 512
IPR002885 Pentatricopeptide_repeat 587 612
IPR002885 Pentatricopeptide_repeat 555 577
IPR002885 Pentatricopeptide_repeat 87 116
IPR002885 Pentatricopeptide_repeat 514 540
IPR002885 Pentatricopeptide_repeat 656 682
IPR002885 Pentatricopeptide_repeat 118 142
No external refs found!