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  5. Solyc02g086730.3.1

Solyc02g086730.3.1


Description : component psRPL12 of large ribosomal subunit proteome


Gene families : OG0005000 (Archaeplastida) Phylogenetic Tree(s): OG0005000_tree ,
OG_05_0004365 (LandPlants) Phylogenetic Tree(s): OG_05_0004365_tree ,
OG_06_0005437 (SeedPlants) Phylogenetic Tree(s): OG_06_0005437_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g086730.3.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00109340 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.06 Archaeplastida
AT3G27830 RPL12-A, RPL12 ribosomal protein L12-A 0.08 Archaeplastida
AT3G27850 RPL12-C ribosomal protein L12-C 0.06 Archaeplastida
Cre13.g581650 No alias Protein biosynthesis.organelle translation... 0.06 Archaeplastida
GSVIVT01032454001 No alias Protein biosynthesis.organelle translation... 0.09 Archaeplastida
Gb_05150 No alias component psRPL12 of large ribosomal subunit proteome 0.04 Archaeplastida
LOC_Os01g47330.1 No alias component psRPL12 of large ribosomal subunit proteome 0.03 Archaeplastida
LOC_Os05g49320.1 No alias component psRPL12 of large ribosomal subunit proteome 0.04 Archaeplastida
Mp5g15720.1 No alias component psRPL12 of large ribosomal subunit proteome 0.07 Archaeplastida
Pp3c16_2080V3.1 No alias ribosomal protein L12-C 0.06 Archaeplastida
Pp3c25_1440V3.1 No alias ribosomal protein L12-C 0.08 Archaeplastida
Pp3c26_10990V3.1 No alias ribosomal protein L12-A 0.04 Archaeplastida
Pp3c4_24130V3.1 No alias ribosomal protein L12-C 0.07 Archaeplastida
Pp3c5_2700V3.1 No alias ribosomal protein L12-C 0.05 Archaeplastida
Zm00001e020247_P001 No alias component psRPL12 of large ribosomal subunit proteome 0.08 Archaeplastida
Zm00001e028001_P001 No alias component psRPL12 of large ribosomal subunit proteome 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Neighborhood
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:0098809 nitrite reductase activity IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR008932 Ribosomal_L7/L12_oligo 64 111
IPR013823 Ribosomal_L7/L12_C 123 189
No external refs found!