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  5. Solyc02g087250.4.1

Solyc02g087250.4.1


Description : CFM2-type plastidial RNA splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0009974 (SeedPlants) Phylogenetic Tree(s): OG_06_0009974_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g087250.4.1
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.01 Archaeplastida
AMTR_s00028p00245370 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.01 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.01 Archaeplastida
Smo20706 No alias CRM-domain containing factor CFM3,... 0.01 Archaeplastida
Zm00001e004284_P002 No alias CRS1 plastidial RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 795 882
IPR001890 RNA-binding_CRM 597 681
IPR001890 RNA-binding_CRM 1120 1206
IPR001890 RNA-binding_CRM 385 468
No external refs found!