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  5. Solyc02g087970.1.1

Solyc02g087970.1.1


Description : transcription factor (zf-HD)


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g087970.1.1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AMTR_s00119p00074870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT1G18835 MIF3 mini zinc finger 0.04 Archaeplastida
AT3G28917 MIF2 mini zinc finger 2 0.04 Archaeplastida
Gb_30985 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_12314g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_453742g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c19_20410V3.1 No alias homeobox protein 21 0.02 Archaeplastida
Pp3c22_9600V3.1 No alias homeobox protein 31 0.02 Archaeplastida
Pp3c2_21160V3.1 No alias homeobox protein 33 0.02 Archaeplastida
Pp3c7_15000V3.1 No alias homeobox protein 33 0.03 Archaeplastida
Zm00001e023331_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 24 74
No external refs found!