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  5. Solyc02g088110.4.1

Solyc02g088110.4.1


Description : PTB-type RNA splicing factor


Gene families : OG0003508 (Archaeplastida) Phylogenetic Tree(s): OG0003508_tree ,
OG_05_0002551 (LandPlants) Phylogenetic Tree(s): OG_05_0002551_tree ,
OG_06_0002602 (SeedPlants) Phylogenetic Tree(s): OG_06_0002602_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g088110.4.1
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g25980.2 No alias PTB-type RNA splicing factor 0.04 Archaeplastida
MA_10431256g0010 No alias PTB-type RNA splicing factor 0.03 Archaeplastida
MA_31482g0010 No alias PTB-type RNA splicing factor 0.02 Archaeplastida
Mp7g10030.1 No alias PTB-type RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 21 71
IPR021790 DUF3355 242 320
No external refs found!