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  5. Solyc02g088610.4.1

Solyc02g088610.4.1


Description : organellar chaperone (Clp-p|Clp-m)


Gene families : OG0000276 (Archaeplastida) Phylogenetic Tree(s): OG0000276_tree ,
OG_05_0002603 (LandPlants) Phylogenetic Tree(s): OG_05_0002603_tree ,
OG_06_0004579 (SeedPlants) Phylogenetic Tree(s): OG_06_0004579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g088610.4.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00164160 evm_27.TU.AmTr_v1... External stimuli response.temperature.Hsp... 0.03 Archaeplastida
AMTR_s00065p00179810 evm_27.TU.AmTr_v1... External stimuli response.temperature.Hsp... 0.02 Archaeplastida
AMTR_s00086p00119290 evm_27.TU.AmTr_v1... External stimuli response.temperature.Hsp... 0.02 Archaeplastida
AT1G74310 ATHSP101, HOT1, HSP101 heat shock protein 101 0.08 Archaeplastida
AT2G25140 CLPB4, CLPB-M, HSP98.7 casein lytic proteinase B4 0.08 Archaeplastida
AT5G15450 CLPB3, CLPB-P, APG6 casein lytic proteinase B3 0.04 Archaeplastida
Cpa|evm.model.tig00001416.4 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
Cpa|evm.model.tig00020996.22 No alias Chaperone protein ClpB2, chloroplastic OS=Oryza sativa... 0.02 Archaeplastida
Cpa|evm.model.tig00021365.4 No alias Chaperone protein ClpB1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre11.g467644 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
GSVIVT01007880001 No alias External stimuli response.temperature.Hsp... 0.06 Archaeplastida
GSVIVT01011496001 No alias External stimuli response.temperature.Hsp... 0.07 Archaeplastida
GSVIVT01035900001 No alias External stimuli response.temperature.Hsp... 0.06 Archaeplastida
Gb_21271 No alias cytosolic chaperone (Hsp101) 0.01 Archaeplastida
Gb_39383 No alias cytosolic chaperone (Hsp101) 0.03 Archaeplastida
LOC_Os02g08490.1 No alias organellar chaperone (Clp-p|Clp-m) 0.1 Archaeplastida
LOC_Os03g31300.1 No alias organellar chaperone (Clp-p|Clp-m) 0.09 Archaeplastida
LOC_Os05g44340.1 No alias cytosolic chaperone (Hsp101) 0.11 Archaeplastida
MA_21130g0010 No alias Chaperone protein ClpB1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Mp1g16450.1 No alias cytosolic chaperone (Hsp101) 0.03 Archaeplastida
Pp3c19_4790V3.1 No alias heat shock protein 101 0.05 Archaeplastida
Pp3c24_9060V3.1 No alias casein lytic proteinase B3 0.05 Archaeplastida
Smo170696 No alias External stimuli response.temperature.Hsp... 0.06 Archaeplastida
Smo174539 No alias External stimuli response.temperature.Hsp... 0.07 Archaeplastida
Smo411118 No alias External stimuli response.temperature.Hsp... 0.06 Archaeplastida
Smo418380 No alias External stimuli response.temperature.Hsp... 0.02 Archaeplastida
Zm00001e002026_P002 No alias organellar chaperone (Clp-p|Clp-m) 0.09 Archaeplastida
Zm00001e013843_P002 No alias organellar chaperone (Clp-p|Clp-m) 0.05 Archaeplastida
Zm00001e032223_P001 No alias cytosolic chaperone (Hsp101) 0.09 Archaeplastida
Zm00001e038056_P001 No alias organellar chaperone (Clp-p|Clp-m) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004312 fatty acid synthase activity IEP Neighborhood
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004564 beta-fructofuranosidase activity IEP Neighborhood
MF GO:0004575 sucrose alpha-glucosidase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0010011 auxin binding IEP Neighborhood
MF GO:0015926 glucosidase activity IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042562 hormone binding IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP Neighborhood
MF GO:0090599 alpha-glucosidase activity IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 683 853
IPR019489 Clp_ATPase_C 860 939
IPR004176 Clp_N 102 151
IPR004176 Clp_N 177 228
IPR003959 ATPase_AAA_core 286 418
No external refs found!