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  5. Solyc02g090240.4.1

Solyc02g090240.4.1


Description : Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana (sp|q9sct2|pp277_arath : 639.0)


Gene families : OG0010988 (Archaeplastida) Phylogenetic Tree(s): OG0010988_tree ,
OG_05_0010944 (LandPlants) Phylogenetic Tree(s): OG_05_0010944_tree ,
OG_06_0010904 (SeedPlants) Phylogenetic Tree(s): OG_06_0010904_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g090240.4.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT3G50420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
LOC_Os04g57670.1 No alias Pentatricopeptide repeat-containing protein At3g50420... 0.08 Archaeplastida
MA_98067g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 90 138
IPR002885 Pentatricopeptide_repeat 355 402
IPR002885 Pentatricopeptide_repeat 456 504
IPR002885 Pentatricopeptide_repeat 253 299
IPR002885 Pentatricopeptide_repeat 152 200
IPR002885 Pentatricopeptide_repeat 530 552
IPR002885 Pentatricopeptide_repeat 227 252
No external refs found!