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  5. Solyc02g091230.4.1

Solyc02g091230.4.1


Description : RING-v-class E3 ligase


Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0000506 (LandPlants) Phylogenetic Tree(s): OG_05_0000506_tree ,
OG_06_0008056 (SeedPlants) Phylogenetic Tree(s): OG_06_0008056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g091230.4.1
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT5G62460 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Archaeplastida
GSVIVT01032602001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.02 Archaeplastida
LOC_Os01g66970.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
LOC_Os05g28730.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
LOC_Os05g47900.1 No alias RING-v-class E3 ligase 0.07 Archaeplastida
LOC_Os11g38800.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Mp8g15410.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Smo420592 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Zm00001e009834_P004 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Zm00001e021220_P001 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Zm00001e025697_P001 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Zm00001e028087_P001 No alias RING-v-class E3 ligase 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
InterPro domains Description Start Stop
IPR022143 DUF3675 68 182
IPR011016 Znf_RING-CH 17 62
No external refs found!