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  5. Solyc02g092320.2.1

Solyc02g092320.2.1


Description : Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana (sp|q9fjw6|pp451_arath : 172.0)


Gene families : OG0003182 (Archaeplastida) Phylogenetic Tree(s): OG0003182_tree ,
OG_05_0017024 (LandPlants) Phylogenetic Tree(s): OG_05_0017024_tree ,
OG_06_0016446 (SeedPlants) Phylogenetic Tree(s): OG_06_0016446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g092320.2.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00027590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g30610,... 0.04 Archaeplastida
AT1G30610 EMB2279, EMB88 pentatricopeptide (PPR) repeat-containing protein 0.08 Archaeplastida
AT5G67570 EMB1408, DG1, EMB246 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
GSVIVT01002074001 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.04 Archaeplastida
GSVIVT01004304001 No alias Protein biosynthesis.organelle translation... 0.08 Archaeplastida
GSVIVT01021752001 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.03 Archaeplastida
Gb_37099 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.04 Archaeplastida
Gb_38669 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.03 Archaeplastida
LOC_Os01g48380.1 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.04 Archaeplastida
LOC_Os05g25060.1 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.03 Archaeplastida
MA_10429917g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_110053g0010 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.03 Archaeplastida
Mp4g21410.1 No alias Pentatricopeptide repeat-containing protein At5g67570,... 0.05 Archaeplastida
Pp3c10_24670V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.07 Archaeplastida
Pp3c23_13490V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Archaeplastida
Solyc02g069570.3.1 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.05 Archaeplastida
Zm00001e028053_P001 No alias Pentatricopeptide repeat-containing protein At1g30610,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!