Solyc02g150102.1.1


Description : 50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflorum (sp|a4qjp0|rk2_aetgr : 109.0)


Gene families : OG0000693 (Archaeplastida) Phylogenetic Tree(s): OG0000693_tree ,
OG_05_0000458 (LandPlants) Phylogenetic Tree(s): OG_05_0000458_tree ,
OG_06_0085260 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g150102.1.1
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
ATCG00830 RPL2.1 ribosomal protein L2 0.04 Archaeplastida
ATCG01310 RPL2.2 ribosomal protein L2 0.04 Archaeplastida
Smo17971 No alias 50S ribosomal protein L2, chloroplastic OS=Huperzia lucidula 0.03 Archaeplastida
Solyc00g500152.1.1 No alias 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
Solyc05g023730.1.1 No alias 50S ribosomal protein L2, chloroplastic OS=Nicotiana... 0.08 Archaeplastida
Solyc10g018610.2.1 No alias No annotation 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 124 161
No external refs found!