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  5. Solyc03g005170.3.1

Solyc03g005170.3.1


Description : PHD finger transcription factor


Gene families : OG0000311 (Archaeplastida) Phylogenetic Tree(s): OG0000311_tree ,
OG_05_0000567 (LandPlants) Phylogenetic Tree(s): OG_05_0000567_tree ,
OG_06_0001295 (SeedPlants) Phylogenetic Tree(s): OG_06_0001295_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g005170.3.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00231010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.06 Archaeplastida
AMTR_s00039p00203500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.05 Archaeplastida
AMTR_s00140p00029580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
AT1G05380 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.07 Archaeplastida
AT2G27980 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Archaeplastida
AT2G36720 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.04 Archaeplastida
AT4G14920 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.07 Archaeplastida
Cre01.g018200 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 Archaeplastida
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 Archaeplastida
GSVIVT01031451001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 Archaeplastida
Gb_41247 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 Archaeplastida
LOC_Os03g53630.1 No alias PHD finger transcription factor 0.03 Archaeplastida
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 Archaeplastida
MA_3931g0010 No alias PHD finger transcription factor 0.03 Archaeplastida
MA_63450g0010 No alias PHD finger transcription factor 0.02 Archaeplastida
Pp3c25_4970V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 Archaeplastida
Pp3c25_9550V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 Archaeplastida
Solyc10g084650.3.1 No alias PHD finger transcription factor 0.05 Archaeplastida
Zm00001e005667_P001 No alias PHD finger transcription factor 0.03 Archaeplastida
Zm00001e013368_P001 No alias PHD finger transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032308 Jas 551 623
IPR019787 Znf_PHD-finger 664 706
No external refs found!