Solyc03g005220.4.1

Description : histone (H2A)

Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g005220.4.1
Cluster	HCCA: Cluster_207

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00055p00221900	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
AMTR_s00057p00215390	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
AMTR_s00058p00158560	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
AMTR_s00115p00128810	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
AT1G08880	GAMMA-H2AX,...	Histone superfamily protein	0.07	Archaeplastida
AT1G51060	HTA10	histone H2A 10	0.07	Archaeplastida
AT1G54690	GAMMA-H2AX,...	gamma histone variant H2AX	0.16	Archaeplastida
AT3G20670	HTA13	histone H2A 13	0.04	Archaeplastida
AT4G27230	HTA2	histone H2A 2	0.08	Archaeplastida
AT5G59870	HTA6	histone H2A 6	0.06	Archaeplastida
Cre06.g264750	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g264950	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g265350	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g266700	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g268050	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g268300	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g271350	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g273900	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g274200	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g274800	No alias	Chromatin organisation.histones.H2A-type histone	0.05	Archaeplastida
Cre06.g275850	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g276500	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre06.g276950	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre12.g504500	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre12.g504750	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre12.g505550	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre12.g506250	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre13.g570100	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre13.g590800	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre13.g591150	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre17.g708550	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre17.g709200	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre17.g710400	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre17.g711700	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre17.g713400	No alias	Chromatin organisation.histones.H2A-type histone	0.06	Archaeplastida
Cre17.g714500	No alias	Chromatin organisation.histones.H2A-type histone	0.07	Archaeplastida
GSVIVT01011034001	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
GSVIVT01014580001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Gb_06384	No alias	histone (H2A)	0.04	Archaeplastida
Gb_07070	No alias	histone (H2A)	0.05	Archaeplastida
Gb_12570	No alias	histone (H2A)	0.04	Archaeplastida
Gb_25326	No alias	histone (H2A)	0.04	Archaeplastida
Gb_37579	No alias	histone (H2A)	0.03	Archaeplastida
LOC_Os03g17100.1	No alias	histone (H2A)	0.02	Archaeplastida
LOC_Os05g02300.1	No alias	histone (H2A)	0.04	Archaeplastida
LOC_Os07g36130.1	No alias	histone (H2A)	0.03	Archaeplastida
LOC_Os07g36140.1	No alias	histone (H2A)	0.04	Archaeplastida
LOC_Os08g33100.1	No alias	histone (H2A)	0.06	Archaeplastida
LOC_Os12g25120.1	No alias	histone (H2A)	0.03	Archaeplastida
MA_10425800g0010	No alias	histone (H2A)	0.08	Archaeplastida
MA_169054g0020	No alias	histone (H2A)	0.03	Archaeplastida
MA_213048g0010	No alias	histone (H2A)	0.04	Archaeplastida
MA_22203g0020	No alias	histone (H2A)	0.05	Archaeplastida
MA_94328g0020	No alias	histone (H2A)	0.04	Archaeplastida
MA_962778g0010	No alias	histone (H2A)	0.09	Archaeplastida
Mp2g00760.1	No alias	histone (H2A)	0.03	Archaeplastida
Mp3g00840.1	No alias	histone (H2A)	0.04	Archaeplastida
Pp3c10_13610V3.1	No alias	gamma histone variant H2AX	0.06	Archaeplastida
Pp3c3_30120V3.1	No alias	Histone superfamily protein	0.04	Archaeplastida
Pp3c6_29410V3.1	No alias	histone H2A 10	0.03	Archaeplastida
Smo166626	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Smo170948	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Smo73637	No alias	Chromatin organisation.histones.H2A-type histone	0.04	Archaeplastida
Smo76653	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Solyc06g084430.4.1	No alias	histone (H2A)	0.06	Archaeplastida
Solyc09g010400.3.1	No alias	histone (H2A)	0.04	Archaeplastida
Zm00001e005512_P001	No alias	histone (H2A)	0.05	Archaeplastida
Zm00001e010232_P001	No alias	histone (H2A)	0.04	Archaeplastida
Zm00001e011643_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e012144_P001	No alias	histone (H2A)	0.12	Archaeplastida
Zm00001e020483_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e033014_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e034815_P001	No alias	histone (H2A)	0.04	Archaeplastida
Zm00001e035183_P002	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e038465_P002	No alias	histone (H2A)	0.05	Archaeplastida
Zm00001e039735_P001	No alias	histone (H2A)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032454	Histone_H2A_C	99	132
IPR007125	Histone_H2A/H2B/H3	17	96

External Links

No external refs found!

Solyc03g005220.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation