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Description : TRAF1 endomembrane trafficking ATG6-stability regulator protein
Gene families : OG0001944 (Archaeplastida) Phylogenetic Tree(s): OG0001944_tree ,
OG_05_0002285 (LandPlants) Phylogenetic Tree(s): OG_05_0002285_tree ,
OG_06_0002760 (SeedPlants) Phylogenetic Tree(s): OG_06_0002760_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc03g005430.4.1 | |
| Cluster | HCCA: Cluster_146 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G04300 | No alias | TRAF-like superfamily protein | 0.05 | Archaeplastida | |
| Cre12.g494000 | No alias | Vesicle trafficking.endomembrane trafficking.PI3-kinase... | 0.02 | Archaeplastida | |
| GSVIVT01018133001 | No alias | Vesicle trafficking.endomembrane trafficking.PI3-kinase... | 0.03 | Archaeplastida | |
| LOC_Os05g43280.1 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.04 | Archaeplastida | |
| LOC_Os12g40520.1 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.05 | Archaeplastida | |
| MA_10434493g0010 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.02 | Archaeplastida | |
| Mp8g14880.1 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.04 | Archaeplastida | |
| Pp3c12_900V3.1 | No alias | TRAF-like superfamily protein | 0.02 | Archaeplastida | |
| Zm00001e003140_P001 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.03 | Archaeplastida | |
| Zm00001e019653_P002 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.02 | Archaeplastida | |
| Zm00001e027387_P004 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.07 | Archaeplastida | |
| Zm00001e032087_P004 | No alias | TRAF1 endomembrane trafficking ATG6-stability regulator protein | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
| CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
| CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
| BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006606 | protein import into nucleus | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0017038 | protein import | IEP | Neighborhood |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
| MF | GO:0030145 | manganese ion binding | IEP | Neighborhood |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Neighborhood |
| BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
| CC | GO:0033643 | host cell part | IEP | Neighborhood |
| CC | GO:0033646 | host intracellular part | IEP | Neighborhood |
| CC | GO:0033647 | host intracellular organelle | IEP | Neighborhood |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0034504 | protein localization to nucleus | IEP | Neighborhood |
| CC | GO:0042025 | host cell nucleus | IEP | Neighborhood |
| CC | GO:0044217 | other organism part | IEP | Neighborhood |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051170 | import into nucleus | IEP | Neighborhood |
| MF | GO:0061608 | nuclear import signal receptor activity | IEP | Neighborhood |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
| MF | GO:0140104 | molecular carrier activity | IEP | Neighborhood |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002083 | MATH/TRAF_dom | 75 | 192 |
| No external refs found! |