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  5. Solyc03g005490.4.1

Solyc03g005490.4.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0002509 (SeedPlants) Phylogenetic Tree(s): OG_06_0002509_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g005490.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00056710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.08 Archaeplastida
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00030p00032810 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
AMTR_s00077p00070720 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00152p00054630 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT1G53010 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT1G72200 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT2G17730 NIP2 NEP-interacting protein 2 0.01 Archaeplastida
AT2G35910 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G42350 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G10910 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT4G09100 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.03 Archaeplastida
GSVIVT01008754001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01009098001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Gb_05386 No alias RHA2 signal transducer of abscisic acid perception 0.05 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g11460.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g16120.1 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os02g46600.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g28080.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os03g44636.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os04g49160.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os04g49700.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os05g29710.1 No alias RING-H2-class E3 ligase 0.1 Archaeplastida
LOC_Os05g36310.1 No alias RING-H2 finger protein ATL77 OS=Arabidopsis thaliana... 0.08 Archaeplastida
LOC_Os06g07100.2 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os06g16060.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g34560.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g34620.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os10g42390.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os11g02250.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os12g02210.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os12g42530.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_10106144g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_133839g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_13397g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_167410g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_201391g0010 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.02 Archaeplastida
MA_226198g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_25345g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_31462g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_31736g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_38690g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_462422g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_61738g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_7120568g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_85088g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Mp4g04600.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g15970.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp6g19130.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c14_22300V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.06 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.01 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.01 Archaeplastida
Smo101273 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo448587 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Smo73386 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g109200.4.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g114090.1.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Solyc03g114190.1.1 No alias RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc04g074820.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc05g010170.2.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e002233_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e008560_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e011901_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e014286_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e015449_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015495_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e037108_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e038107_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 76 119
No external refs found!