1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g005590.2.1

Solyc03g005590.2.1


Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 984.0)


Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0000407 (LandPlants) Phylogenetic Tree(s): OG_05_0000407_tree ,
OG_06_0000284 (SeedPlants) Phylogenetic Tree(s): OG_06_0000284_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g005590.2.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00031410 evm_27.TU.AmTr_v1... PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
AT1G69710 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Archaeplastida
AT3G23270 No alias Regulator of chromosome condensation (RCC1) family with... 0.07 Archaeplastida
AT3G47660 No alias Regulator of chromosome condensation (RCC1) family protein 0.06 Archaeplastida
AT4G14368 No alias Regulator of chromosome condensation (RCC1) family protein 0.06 Archaeplastida
GSVIVT01020014001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
GSVIVT01027823001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
Gb_31523 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
LOC_Os04g58960.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
LOC_Os05g31920.2 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 Archaeplastida
LOC_Os05g46740.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.11 Archaeplastida
Smo180358 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
Zm00001e007456_P003 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Zm00001e015467_P001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Zm00001e023246_P001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Zm00001e032303_P001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood
InterPro domains Description Start Stop
IPR027988 BRX_N 857 890
IPR000306 Znf_FYVE 600 666
IPR000408 Reg_chr_condens 495 544
IPR000408 Reg_chr_condens 381 430
IPR000408 Reg_chr_condens 549 595
IPR000408 Reg_chr_condens 327 377
IPR000408 Reg_chr_condens 275 323
IPR000408 Reg_chr_condens 446 490
IPR013591 Brevis_radix_dom 985 1039
No external refs found!