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  5. Solyc03g005970.4.1

Solyc03g005970.4.1


Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0000889 (LandPlants) Phylogenetic Tree(s): OG_05_0000889_tree ,
OG_06_0000875 (SeedPlants) Phylogenetic Tree(s): OG_06_0000875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g005970.4.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001128.17 No alias No description available 0.01 Archaeplastida
Cre05.g238374 No alias ATP-dependent RNA helicase DEAH11, chloroplastic... 0.01 Archaeplastida
GSVIVT01016055001 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.03 Archaeplastida
MA_179230g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 186 237
No external refs found!