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  5. Solyc03g006520.3.1

Solyc03g006520.3.1


Description : component SF3B2 of splicing factor 3B complex


Gene families : OG0003666 (Archaeplastida) Phylogenetic Tree(s): OG0003666_tree ,
OG_05_0003648 (LandPlants) Phylogenetic Tree(s): OG_05_0003648_tree ,
OG_06_0005895 (SeedPlants) Phylogenetic Tree(s): OG_06_0005895_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g006520.3.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT4G21660 No alias proline-rich spliceosome-associated (PSP) family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000829.24 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01002655001 No alias No description available 0.04 Archaeplastida
MA_258650g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g16820.1 No alias component SF3B2 of splicing factor 3B complex 0.02 Archaeplastida
Pp3c17_13490V3.1 No alias proline-rich spliceosome-associated (PSP) family protein 0.03 Archaeplastida
Zm00001e013359_P002 No alias component SF3B2 of splicing factor 3B complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Neighborhood
CC GO:0000347 THO complex IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0000445 THO complex part of transcription export complex IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0019905 syntaxin binding IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
InterPro domains Description Start Stop
IPR007180 DUF382 177 310
IPR006568 PSP_pro-rich 319 364
No external refs found!