Solyc03g006990.1.1


Description : Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana (sp|q9fjy7|pp449_arath : 418.0)


Gene families : OG0009780 (Archaeplastida) Phylogenetic Tree(s): OG0009780_tree ,
OG_05_0001276 (LandPlants) Phylogenetic Tree(s): OG_05_0001276_tree ,
OG_06_0000902 (SeedPlants) Phylogenetic Tree(s): OG_06_0000902_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g006990.1.1

Target Alias Description ECC score Gene Family Method Actions
AT1G09190 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01024061001 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.04 Archaeplastida
Gb_31465 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e002394_P001 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.04 Archaeplastida
Zm00001e010182_P001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 390 414
IPR002885 Pentatricopeptide_repeat 154 180
IPR002885 Pentatricopeptide_repeat 314 362
IPR002885 Pentatricopeptide_repeat 211 261
No external refs found!