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  5. Solyc03g025700.2.1

Solyc03g025700.2.1


Description : OTP70 plastidial RNA splicing factor


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0009182 (LandPlants) Phylogenetic Tree(s): OG_05_0009182_tree ,
OG_06_0010965 (SeedPlants) Phylogenetic Tree(s): OG_06_0010965_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g025700.2.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.05 Archaeplastida
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00040p00098330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.06 Archaeplastida
AMTR_s00057p00172690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g37170... 0.03 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01000086001 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.05 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01000420001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.06 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.03 Archaeplastida
GSVIVT01009407001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
GSVIVT01012159001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
GSVIVT01012201001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.06 Archaeplastida
GSVIVT01012461001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.14 Archaeplastida
GSVIVT01015466001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01021246001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.04 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.05 Archaeplastida
GSVIVT01025569001 No alias Pentatricopeptide repeat-containing protein At5g66500,... 0.04 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01028022001 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.04 Archaeplastida
GSVIVT01033735001 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
GSVIVT01036207001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.08 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01036943001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.03 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_33718 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os03g56400.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
LOC_Os10g34720.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os12g30620.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
MA_10429069g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_138676g0010 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
MA_265921g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_482767g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
MA_89214g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Smo111075 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.04 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Zm00001e004121_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.05 Archaeplastida
Zm00001e029819_P003 No alias RNA editing factor (CRR22) 0.05 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.07 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006787 porphyrin-containing compound catabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015996 chlorophyll catabolic process IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033015 tetrapyrrole catabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046149 pigment catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0047746 chlorophyllase activity IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 78 122
IPR002885 Pentatricopeptide_repeat 52 75
IPR002885 Pentatricopeptide_repeat 150 177
IPR002885 Pentatricopeptide_repeat 198 257
No external refs found!