Solyc03g031720.3.1

Description : mRNA-binding regulatory factor (RBP45/47)

Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0000471 (LandPlants) Phylogenetic Tree(s): OG_05_0000471_tree ,
OG_06_0000318 (SeedPlants) Phylogenetic Tree(s): OG_06_0000318_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g031720.3.1
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00247520	evm_27.TU.AmTr_v1...	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00062p00161920	evm_27.TU.AmTr_v1...	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00157p00079360	evm_27.TU.AmTr_v1...	Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana	0.03	Archaeplastida
AT3G19130	ATRBP47B, RBP47B	RNA-binding protein 47B	0.05	Archaeplastida
GSVIVT01025280001	No alias	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01037635001	No alias	Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_06023	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	Archaeplastida
LOC_Os02g35950.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.04	Archaeplastida
LOC_Os03g07800.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.02	Archaeplastida
LOC_Os04g37690.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	Archaeplastida
LOC_Os04g53440.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.02	Archaeplastida
LOC_Os07g33330.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	Archaeplastida
MA_10433182g0010	No alias	Polyadenylate-binding protein RBP47C OS=Arabidopsis...	0.03	Archaeplastida
MA_10433660g0010	No alias	mRNA-binding regulatory factor (RBP45/47)	0.06	Archaeplastida
MA_96561g0010	No alias	Polyadenylate-binding protein RBP47C OS=Arabidopsis...	0.02	Archaeplastida
Mp8g07840.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.02	Archaeplastida
Pp3c12_10910V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.04	Archaeplastida
Pp3c12_10960V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.04	Archaeplastida
Smo80061	No alias	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia	0.05	Archaeplastida
Zm00001e000547_P001	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	Archaeplastida
Zm00001e006878_P004	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e012505_P001	No alias	mRNA-binding regulatory factor (RBP45/47)	0.02	Archaeplastida
Zm00001e022780_P001	No alias	mRNA-binding regulatory factor (RBP45/47)	0.09	Archaeplastida
Zm00001e040981_P001	No alias	mRNA-binding regulatory factor (RBP45/47)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0031369	translation initiation factor binding	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901567	fatty acid derivative binding	IEP	Neighborhood
MF	GO:1901681	sulfur compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	273	337
IPR000504	RRM_dom	167	236
IPR000504	RRM_dom	74	141

External Links

No external refs found!

Solyc03g031720.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation