Solyc03g031970.4.1


Description : transcription factor (ARF)


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g031970.4.1
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01011008001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01021553001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
Gb_33804 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os01g13520.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os02g35140.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.07 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.06 Archaeplastida
MA_164845g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_85955g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c6_26890V3.1 No alias auxin response factor 16 0.05 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.08 Archaeplastida
Solyc08g082630.3.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e006640_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e013191_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e015164_P002 No alias transcription factor (ARF) 0.06 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e018761_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e020205_P004 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e025163_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e041866_P001 No alias transcription factor (ARF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
MF GO:0070403 NAD+ binding IEP Neighborhood
InterPro domains Description Start Stop
IPR010525 Auxin_resp 253 336
IPR003340 B3_DNA-bd 127 228
No external refs found!