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  5. Solyc03g033500.4.1

Solyc03g033500.4.1


Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001543 (Archaeplastida) Phylogenetic Tree(s): OG0001543_tree ,
OG_05_0107968 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0085723 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g033500.4.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT2G17870 ATCSP3, CSP3 cold shock domain protein 3 0.14 Archaeplastida
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.04 Archaeplastida
Pp3c5_7920V3.1 No alias cold shock domain protein 1 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 9 72
IPR001878 Znf_CCHC 94 108
IPR001878 Znf_CCHC 150 166
IPR001878 Znf_CCHC 199 215
IPR001878 Znf_CCHC 121 136
No external refs found!