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  5. Solyc03g051780.3.1

Solyc03g051780.3.1


Description : Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana (sp|q9lic3|pp227_arath : 632.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0004751 (LandPlants) Phylogenetic Tree(s): OG_05_0004751_tree ,
OG_06_0003052 (SeedPlants) Phylogenetic Tree(s): OG_06_0003052_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g051780.3.1
Cluster HCCA: Cluster_385

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266930 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00004p00087070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00010p00228270 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
GSVIVT01007645001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.04 Archaeplastida
GSVIVT01008015001 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.05 Archaeplastida
GSVIVT01008715001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.09 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
GSVIVT01015521001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.06 Archaeplastida
GSVIVT01020016001 No alias Pentatricopeptide repeat-containing protein At1g26900,... 0.1 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.05 Archaeplastida
GSVIVT01024912001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
GSVIVT01025295001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.08 Archaeplastida
GSVIVT01026181001 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
GSVIVT01027196001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.04 Archaeplastida
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.06 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01036169001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_27891 No alias RNA editing factor (OTP86) 0.03 Archaeplastida
Gb_29557 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_29874 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Gb_33070 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_38751 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
LOC_Os06g03570.2 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.03 Archaeplastida
LOC_Os06g30940.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida
LOC_Os07g39090.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os08g04400.1 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
LOC_Os12g13110.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.05 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_49629g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Pp3c2_12230V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
Smo101239 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
Smo121365 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 Archaeplastida
Smo131170 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Smo182822 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.05 Archaeplastida
Smo80412 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc02g094125.1.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.11 Archaeplastida
Solyc09g008300.2.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.12 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Zm00001e001038_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.08 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.05 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e007597_P001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.08 Archaeplastida
Zm00001e018597_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e023504_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 125 172
IPR002885 Pentatricopeptide_repeat 328 375
IPR002885 Pentatricopeptide_repeat 227 273
IPR002885 Pentatricopeptide_repeat 300 327
IPR002885 Pentatricopeptide_repeat 406 430
No external refs found!