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Aliases : evm_27.TU.AmTr_v1.0_scaffold00023.219
Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT4 component
Gene families : OG0002795 (Archaeplastida) Phylogenetic Tree(s): OG0002795_tree ,
OG_05_0002922 (LandPlants) Phylogenetic Tree(s): OG_05_0002922_tree ,
OG_06_0002646 (SeedPlants) Phylogenetic Tree(s): OG_06_0002646_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00023p00245540 | |
| Cluster | HCCA: Cluster_271 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001065.17 | No alias | RNA processing.RNA decay.deadenylation-dependent... | 0.02 | Archaeplastida | |
| Solyc06g005190.4.1 | No alias | component NOT4 of mRNA deadenylation CCR4-NOT complex | 0.02 | Archaeplastida | |
| Solyc11g072590.3.1 | No alias | component NOT4 of mRNA deadenylation CCR4-NOT complex | 0.03 | Archaeplastida | |
| Zm00001e023935_P001 | No alias | component NOT4 of mRNA deadenylation CCR4-NOT complex | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001505 | regulation of neurotransmitter levels | IEP | Neighborhood |
| MF | GO:0004221 | obsolete ubiquitin thiolesterase activity | IEP | Neighborhood |
| MF | GO:0004372 | glycine hydroxymethyltransferase activity | IEP | Neighborhood |
| MF | GO:0005244 | voltage-gated ion channel activity | IEP | Neighborhood |
| MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Neighborhood |
| MF | GO:0005253 | anion channel activity | IEP | Neighborhood |
| MF | GO:0005254 | chloride channel activity | IEP | Neighborhood |
| BP | GO:0006544 | glycine metabolic process | IEP | Neighborhood |
| BP | GO:0006563 | L-serine metabolic process | IEP | Neighborhood |
| BP | GO:0006810 | transport | IEP | Neighborhood |
| BP | GO:0006820 | anion transport | IEP | Neighborhood |
| BP | GO:0006821 | chloride transport | IEP | Neighborhood |
| BP | GO:0006886 | intracellular protein transport | IEP | Neighborhood |
| BP | GO:0006888 | ER to Golgi vesicle-mediated transport | IEP | Neighborhood |
| BP | GO:0008104 | protein localization | IEP | Neighborhood |
| MF | GO:0008308 | voltage-gated anion channel activity | IEP | Neighborhood |
| MF | GO:0008509 | anion transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0015031 | protein transport | IEP | Neighborhood |
| MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015108 | chloride transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0015698 | inorganic anion transport | IEP | Neighborhood |
| BP | GO:0015833 | peptide transport | IEP | Neighborhood |
| BP | GO:0016192 | vesicle-mediated transport | IEP | Neighborhood |
| MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Neighborhood |
| MF | GO:0022832 | voltage-gated channel activity | IEP | Neighborhood |
| MF | GO:0022836 | gated channel activity | IEP | Neighborhood |
| MF | GO:0022839 | ion gated channel activity | IEP | Neighborhood |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Neighborhood |
| CC | GO:0030117 | membrane coat | IEP | Neighborhood |
| CC | GO:0030120 | vesicle coat | IEP | Neighborhood |
| CC | GO:0030126 | COPI vesicle coat | IEP | Neighborhood |
| CC | GO:0030127 | COPII vesicle coat | IEP | Neighborhood |
| BP | GO:0033036 | macromolecule localization | IEP | Neighborhood |
| BP | GO:0042133 | neurotransmitter metabolic process | IEP | Neighborhood |
| BP | GO:0042886 | amide transport | IEP | Neighborhood |
| CC | GO:0044431 | Golgi apparatus part | IEP | Neighborhood |
| CC | GO:0044433 | cytoplasmic vesicle part | IEP | Neighborhood |
| BP | GO:0045184 | establishment of protein localization | IEP | Neighborhood |
| BP | GO:0046907 | intracellular transport | IEP | Neighborhood |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Neighborhood |
| BP | GO:0051179 | localization | IEP | Neighborhood |
| BP | GO:0051234 | establishment of localization | IEP | Neighborhood |
| BP | GO:0051641 | cellular localization | IEP | Neighborhood |
| BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
| BP | GO:0055085 | transmembrane transport | IEP | Neighborhood |
| BP | GO:0071702 | organic substance transport | IEP | Neighborhood |
| BP | GO:0071705 | nitrogen compound transport | IEP | Neighborhood |
| CC | GO:0098796 | membrane protein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |