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  5. Solyc03g052980.3.1

Solyc03g052980.3.1


Description : DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana (sp|q84w89|rh37_arath : 785.0)


Gene families : OG0002046 (Archaeplastida) Phylogenetic Tree(s): OG0002046_tree ,
OG_05_0001832 (LandPlants) Phylogenetic Tree(s): OG_05_0001832_tree ,
OG_06_0001913 (SeedPlants) Phylogenetic Tree(s): OG_06_0001913_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g052980.3.1
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00136740 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00133p00101570 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.06 Archaeplastida
AT3G58510 No alias DEA(D/H)-box RNA helicase family protein 0.06 Archaeplastida
GSVIVT01033437001 No alias DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_15078 No alias DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os07g10250.1 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.05 Archaeplastida
MA_137324g0010 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.05 Archaeplastida
MA_181920g0010 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.03 Archaeplastida
Pp3c1_40410V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Pp3c2_1920V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
Smo267628 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e011396_P001 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 393 507
IPR011545 DEAD/DEAH_box_helicase_dom 177 357
No external refs found!