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  5. Solyc03g058890.4.1

Solyc03g058890.4.1


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g058890.4.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.12 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.16 Archaeplastida
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.16 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.13 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.06 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G04310 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.1 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.13 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.08 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.16 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.17 Archaeplastida
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Gb_02248 No alias pectate lyase 0.02 Archaeplastida
Gb_19802 No alias pectate lyase 0.04 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.07 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.11 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.09 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.07 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.03 Archaeplastida
MA_10332686g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.02 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.02 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_35100V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Solyc03g071570.3.1 No alias pectate lyase 0.04 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.02 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.07 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 27 87
IPR002022 Pec_lyase 185 364
No external refs found!