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  5. Solyc03g059010.4.1

Solyc03g059010.4.1


Description : deadenylase component CCR4 of CCR4-NOT complex


Gene families : OG0003309 (Archaeplastida) Phylogenetic Tree(s): OG0003309_tree ,
OG_05_0004039 (LandPlants) Phylogenetic Tree(s): OG_05_0004039_tree ,
OG_06_0006519 (SeedPlants) Phylogenetic Tree(s): OG_06_0006519_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g059010.4.1
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
Pp3c8_24970V3.1 No alias DNAse I-like superfamily protein 0.03 Archaeplastida
Smo270348 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR005135 Endo/exonuclease/phosphatase 245 577
IPR031615 Zfn-C6H2 71 110
No external refs found!