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  5. Solyc03g063200.3.1

Solyc03g063200.3.1


Description : C3H zinc finger transcription factor


Gene families : OG0001099 (Archaeplastida) Phylogenetic Tree(s): OG0001099_tree ,
OG_05_0001093 (LandPlants) Phylogenetic Tree(s): OG_05_0001093_tree ,
OG_06_0001843 (SeedPlants) Phylogenetic Tree(s): OG_06_0001843_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g063200.3.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00176740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 Archaeplastida
AMTR_s00149p00054910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 Archaeplastida
GSVIVT01025360001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 Archaeplastida
LOC_Os02g10080.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
MA_159838g0010 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
MA_26803g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_68032g0010 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
MA_83924g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Zm00001e030509_P002 No alias C3H zinc finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 91 116
IPR000571 Znf_CCCH 247 271
IPR004088 KH_dom_type_1 156 219
No external refs found!